/EXTERNAL McGill EMC/mapping_coverage/K006174_1_lane_gembs
BACK
SAMPLE K006174_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
310471088 |
100% |
26821558667 |
100% |
| Mapped |
308261800 |
99.29 % |
26600629867 |
99.18 % |
| Passed |
262372135 |
84.51 % |
22011663367 |
82.07 % |
| NotPassed |
45889665 |
14.78 % |
4588966500 |
17.11 % |
| |
|
|
|
|
| LowMAPQ |
39960268 |
12.87 % |
3996026800 |
14.90 % |
| MateUnmapped |
2209288 |
0.71 % |
220928800 |
0.82 % |
| Duplicate |
1972039 |
0.64 % |
197203900 |
0.74 % |
| BadOrientation |
22 |
0.00 % |
2200 |
0.00 % |
| LargeInsertSize |
1350 |
0.00 % |
135000 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
3955986 |
1.27 % |
395598600 |
1.47 % |
| Unmapped |
2209288 |
0.71 % |
220928800 |
0.82 % |
Base Level Counts
| Bases |
# |
% |
| Total |
26228789300 |
100% |
| Passed |
20578891574 |
78.46 % |
| Trimmed |
1144491925 |
4.36 % |
| Clipped |
36681665 |
0.14 % |
| Overlapping |
4180444268 |
15.94 % |
| LowQuality |
288279868 |
1.10 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |