/EXTERNAL McGill EMC/methylation/K006174_1_lane_gembs

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SAMPLE K006174_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26057243 4779606 18.34 %
NonRefCpG 322800 31880 9.88 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006174_1_lane_gembs_coverage_refCpG.png ./IMG//K006174_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006174_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006174_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006174_1_lane_gembs_quality_refcpg.png ./IMG//K006174_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006174_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6451561 13.24 % 417328 3.35 % 119214 20.10 % 3857 3.73 %
Intermediate (0.3-0.7) 14159903 29.07 % 2333966 18.72 % 182653 30.80 % 19661 19.00 %
Methylated (0.7-1) 28100898 57.69 % 9717117 77.93 % 291230 49.10 % 79973 77.28 %
Median Methylation 0.750 0.860 0.690 0.860