/EXTERNAL McGill EMC/K006177_1_lane_gembs

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SAMPLE K006177_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 382569940 100.00 % 191284970 100.00 % 191284970 100.00 %
General Reads 372668751 97.41 % 187108516 97.82 % 185560235 97.01 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 679322 0.18 % 341001 0.18 % 338321 0.18 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 9221867 2.41 % 3835453 2.01 % 5386414 2.82 %
Bisulfite_reads C2T 190519584 49.80 % 95636114 50.00 % 94883470 49.60 %
Bisulfite_reads G2A 182828489 47.79 % 91813403 48.00 % 91015086 47.58 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 149209351
Average Unique 78.00 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 15080223646 39.03 % 5929497438 30.69 % 9150726208 47.36 %
Base Counts Overall C 4075094470 10.55 % 220879638 1.14 % 3854214832 19.95 %
Base Counts Overall G 4110197164 10.64 % 3872275091 20.04 % 237922073 1.23 %
Base Counts Overall T 14873899252 38.49 % 9054735920 46.87 % 5819163332 30.12 %
Base Counts Overall N 500149408 1.29 % 242393883 1.25 % 257755525 1.33 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9948615969830852
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 170187603



Mapping Quality

Mapping Quality Histogram
K006177_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006177_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0039.Bisulfite-Seq.DNA_Methylation.EGAX00001273045.fastq_MS003901