/EXTERNAL McGill EMC/mapping_coverage/K006177_1_lane_gembs
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SAMPLE K006177_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
369550290 |
100% |
31140802789 |
100% |
| Mapped |
365902255 |
99.01 % |
30775999289 |
98.83 % |
| Passed |
294314343 |
79.64 % |
23617208089 |
75.84 % |
| NotPassed |
71587912 |
19.37 % |
7158791200 |
22.99 % |
| |
|
|
|
|
| LowMAPQ |
59473032 |
16.09 % |
5947303200 |
19.10 % |
| MateUnmapped |
3648035 |
0.99 % |
364803500 |
1.17 % |
| Duplicate |
3160560 |
0.86 % |
316056000 |
1.01 % |
| BadOrientation |
42 |
0.00 % |
4200 |
0.00 % |
| LargeInsertSize |
2376 |
0.00 % |
237600 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
8951902 |
2.42 % |
895190200 |
2.87 % |
| Unmapped |
3648035 |
0.99 % |
364803500 |
1.17 % |
Base Level Counts
| Bases |
# |
% |
| Total |
29423256500 |
100% |
| Passed |
21968137148 |
74.66 % |
| Trimmed |
1249766063 |
4.25 % |
| Clipped |
49637119 |
0.17 % |
| Overlapping |
5756411292 |
19.56 % |
| LowQuality |
399304878 |
1.36 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |