/EXTERNAL McGill EMC/methylation/K006177_1_lane_gembs

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SAMPLE K006177_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26197476 4079602 15.57 %
NonRefCpG 324413 30062 9.27 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006177_1_lane_gembs_coverage_refCpG.png ./IMG//K006177_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006177_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006177_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006177_1_lane_gembs_quality_refcpg.png ./IMG//K006177_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006177_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7590295 15.57 % 555109 4.74 % 133003 22.31 % 5565 5.35 %
Intermediate (0.3-0.7) 15967844 32.75 % 2589575 22.11 % 198876 33.36 % 23366 22.45 %
Methylated (0.7-1) 25195981 51.68 % 8567156 73.15 % 264317 44.33 % 75171 72.21 %
Median Methylation 0.710 0.840 0.640 0.830