/EXTERNAL McGill EMC/K006178_1_lane_gembs

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SAMPLE K006178_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 914967112 100.00 % 457483556 100.00 % 457483556 100.00 %
General Reads 825420672 90.21 % 410835259 89.80 % 414585413 90.62 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1496535 0.16 % 750429 0.16 % 746106 0.16 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 88049905 9.62 % 45897868 10.03 % 42152037 9.21 %
Bisulfite_reads C2T 421753694 46.09 % 209938250 45.89 % 211815444 46.30 %
Bisulfite_reads G2A 405163513 44.28 % 201647438 44.08 % 203516075 44.49 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 327239049
Average Unique 71.53 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 35543290532 38.46 % 14235781417 30.81 % 21307509115 46.11 %
Base Counts Overall C 10731271506 11.61 % 1388000689 3.00 % 9343270817 20.22 %
Base Counts Overall G 11057876410 11.97 % 9377676297 20.30 % 1680200113 3.64 %
Base Counts Overall T 34132181035 36.93 % 20738025435 44.88 % 13394155600 28.99 %
Base Counts Overall N 947058829 1.02 % 466355318 1.01 % 480703511 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9942238469943494
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 378574220



Mapping Quality

Mapping Quality Histogram
K006178_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006178_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0015.Bisulfite-Seq.DNA_Methylation.EGAX00001272913.fastq_MS001501