/EXTERNAL McGill EMC/mapping_coverage/K006178_1_lane_gembs
BACK
SAMPLE K006178_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
802636717 |
100% |
72748694094 |
100% |
| Mapped |
789113353 |
98.32 % |
71396357694 |
98.14 % |
| Passed |
612780830 |
76.35 % |
53763105394 |
73.90 % |
| NotPassed |
176332523 |
21.97 % |
17633252300 |
24.24 % |
| |
|
|
|
|
| LowMAPQ |
126903492 |
15.81 % |
12690349200 |
17.44 % |
| MateUnmapped |
13523364 |
1.68 % |
1352336400 |
1.86 % |
| Duplicate |
22969429 |
2.86 % |
2296942900 |
3.16 % |
| BadOrientation |
62 |
0.00 % |
6200 |
0.00 % |
| LargeInsertSize |
116360 |
0.01 % |
11636000 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
26343180 |
3.28 % |
2634318000 |
3.62 % |
| Unmapped |
13523364 |
1.68 % |
1352336400 |
1.86 % |
Base Level Counts
| Bases |
# |
% |
| Total |
61251855700 |
100% |
| Passed |
50056796671 |
81.72 % |
| Trimmed |
2760259875 |
4.51 % |
| Clipped |
109783467 |
0.18 % |
| Overlapping |
7378966839 |
12.05 % |
| LowQuality |
946048848 |
1.54 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |