/EXTERNAL McGill EMC/methylation/K006178_1_lane_gembs

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SAMPLE K006178_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26688899 17881030 67.00 %
NonRefCpG 267531 150646 56.31 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006178_1_lane_gembs_coverage_refCpG.png ./IMG//K006178_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006178_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006178_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006178_1_lane_gembs_quality_refcpg.png ./IMG//K006178_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006178_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6453666 12.39 % 2887014 7.28 % 55030 10.93 % 17485 5.07 %
Intermediate (0.3-0.7) 13072402 25.10 % 8715505 21.98 % 134691 26.75 % 76970 22.32 %
Methylated (0.7-1) 32563979 62.51 % 28052423 70.74 % 313871 62.33 % 250377 72.61 %
Median Methylation 0.790 0.830 0.780 0.830