{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 214211844, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 199323789, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 93.05, 
            "paired": 214211844, 
            "paired_qc_failed": 0, 
            "read1": 107105922, 
            "read1_qc_failed": 0, 
            "read2": 107105922, 
            "read2_qc_failed": 0, 
            "paired_properly": 197352844, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 92.13, 
            "with_itself": 198054754, 
            "with_itself_qc_failed": 0, 
            "singletons": 1269035, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.59, 
            "diff_chroms": 226612, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 82773480, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 80507883, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 97.26, 
            "paired": 82773480, 
            "paired_qc_failed": 0, 
            "read1": 41386740, 
            "read1_qc_failed": 0, 
            "read2": 41386740, 
            "read2_qc_failed": 0, 
            "paired_properly": 79812054, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 96.42, 
            "with_itself": 80154095, 
            "with_itself_qc_failed": 0, 
            "singletons": 353788, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.43, 
            "diff_chroms": 116599, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 88117678, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 24103573, 
            "paired_opt_dupes": 23965, 
            "dupes_pct": 0.273538
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 35608364, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 3238646, 
            "paired_opt_dupes": 8047, 
            "dupes_pct": 0.090952
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 88114125, 
            "distinct_read_pairs": 64011495, 
            "one_read_pair": 46106515, 
            "two_read_pair": 13243599, 
            "NRF": 0.726461, 
            "PBC1": 0.720285, 
            "PBC2": 3.481419
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 35575289, 
            "distinct_read_pairs": 32339485, 
            "one_read_pair": 29414677, 
            "two_read_pair": 2647683, 
            "NRF": 0.909043, 
            "PBC1": 0.909559, 
            "PBC2": 11.109592
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 128028210, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 128028210, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 128028210, 
            "paired_qc_failed": 0, 
            "read1": 64014105, 
            "read1_qc_failed": 0, 
            "read2": 64014105, 
            "read2_qc_failed": 0, 
            "paired_properly": 128028210, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 128028210, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 64739436, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 64739436, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 64739436, 
            "paired_qc_failed": 0, 
            "read1": 32369718, 
            "read1_qc_failed": 0, 
            "read2": 32369718, 
            "read2_qc_failed": 0, 
            "paired_properly": 64739436, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 64739436, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 86777, 
        "Np": 0, 
        "N_opt": 86777, 
        "N_consv": 86777, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 130, 
            "corr_est_frag_len": 0.172465119965962, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.1820184, 
            "argmin_corr": 1500, 
            "min_corr": 0.1664197, 
            "NSC": 1.036326, 
            "RSC": 0.387558
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.0937237996298
        }, 
        "rep1-pr1": {
            "FRiP": 0.127020004218
        }, 
        "rep1-pr2": {
            "FRiP": 0.126969607024
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.0813864774298
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.294387026555, 
            "auc": 0.496400813096, 
            "ch_div": 0.102701946241, 
            "elbow_pt": 0.0, 
            "jsd": 0.568734193664, 
            "syn_auc": 0.500163182172, 
            "syn_elbow_pt": 0.0693222844095, 
            "syn_jsd": 0.261036093049
        }
    ]
}
