/EXTERNAL McGill EMC/K006180_1_lane_gembs

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SAMPLE K006180_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1118252158 100.00 % 559126079 100.00 % 559126079 100.00 %
General Reads 981647687 87.78 % 489876338 87.61 % 491771349 87.95 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 971860 0.09 % 488589 0.09 % 483271 0.09 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 135632611 12.13 % 68761152 12.30 % 66871459 11.96 %
Bisulfite_reads C2T 503914853 45.06 % 251553147 44.99 % 252361706 45.14 %
Bisulfite_reads G2A 478704694 42.81 % 238811780 42.71 % 239892914 42.90 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 401712941
Average Unique 71.85 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 42680011633 37.79 % 17884255701 31.67 % 24795755932 43.91 %
Base Counts Overall C 13925209489 12.33 % 2402736030 4.25 % 11522473459 20.40 %
Base Counts Overall G 14411110702 12.76 % 11849828616 20.98 % 2561282086 4.54 %
Base Counts Overall T 40769745274 36.10 % 23770564186 42.09 % 16999181088 30.10 %
Base Counts Overall N 1157390860 1.02 % 564349446 1.00 % 593041414 1.05 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9618966262714588
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 467455207



Mapping Quality

Mapping Quality Histogram
K006180_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006180_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0010.Bisulfite-Seq.DNA_Methylation.EGAX00001272866.fastq_MS001001