/EXTERNAL McGill EMC/K006181_1_lane_gembs

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SAMPLE K006181_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1140179424 100.00 % 570089712 100.00 % 570089712 100.00 %
General Reads 1106816715 97.07 % 554933625 97.34 % 551883090 96.81 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 700454 0.06 % 351463 0.06 % 348991 0.06 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 32662255 2.86 % 14804624 2.60 % 17857631 3.13 %
Bisulfite_reads C2T 566664194 49.70 % 284115843 49.84 % 282548351 49.56 %
Bisulfite_reads G2A 540852975 47.44 % 271169245 47.57 % 269683730 47.31 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 437243930
Average Unique 76.70 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 44474657180 38.62 % 17644310200 30.64 % 26830346980 46.60 %
Base Counts Overall C 12703510390 11.03 % 852142001 1.48 % 11851368389 20.58 %
Base Counts Overall G 12987344263 11.28 % 11977640078 20.80 % 1009704185 1.75 %
Base Counts Overall T 43768462176 38.01 % 26521656325 46.06 % 17246805851 29.95 %
Base Counts Overall N 1224147815 1.06 % 583312308 1.01 % 640835507 1.11 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9862190419914342
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 507540613



Mapping Quality

Mapping Quality Histogram
K006181_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006181_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0124.Bisulfite-Seq.DNA_Methylation.EGAX00001425227.release_6