/EXTERNAL McGill EMC/mapping_coverage/K006181_1_lane_gembs
BACK
SAMPLE K006181_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1097991815 |
100% |
96374010256 |
100% |
| Mapped |
1084587518 |
98.78 % |
95033580556 |
98.61 % |
| Passed |
864150480 |
78.70 % |
72989876756 |
75.74 % |
| NotPassed |
220437038 |
20.08 % |
22043703800 |
22.87 % |
| |
|
|
|
|
| LowMAPQ |
197757780 |
18.01 % |
19775778000 |
20.52 % |
| MateUnmapped |
13404297 |
1.22 % |
1340429700 |
1.39 % |
| Duplicate |
8913194 |
0.81 % |
891319400 |
0.92 % |
| BadOrientation |
110 |
0.00 % |
11000 |
0.00 % |
| LargeInsertSize |
197098 |
0.02 % |
19709800 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
13568856 |
1.24 % |
1356885600 |
1.41 % |
| Unmapped |
13404297 |
1.22 % |
1340429700 |
1.39 % |
Base Level Counts
| Bases |
# |
% |
| Total |
86399216100 |
100% |
| Passed |
67884483256 |
78.57 % |
| Trimmed |
3794753712 |
4.39 % |
| Clipped |
157301590 |
0.18 % |
| Overlapping |
13252037754 |
15.34 % |
| LowQuality |
1310639788 |
1.52 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |