/EXTERNAL McGill EMC/K006183_1_lane_gembs

BACK

SAMPLE K006183_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 400224680 100.00 % 200112340 100.00 % 200112340 100.00 %
General Reads 391790358 97.89 % 196784226 98.34 % 195006132 97.45 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 227539 0.06 % 114405 0.06 % 113134 0.06 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 8206783 2.05 % 3213709 1.61 % 4993074 2.50 %
Bisulfite_reads C2T 200151453 50.01 % 100519223 50.23 % 99632230 49.79 %
Bisulfite_reads G2A 191866444 47.94 % 96379408 48.16 % 95487036 47.72 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 160622851
Average Unique 80.27 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 15827518520 39.16 % 6203012903 30.69 % 9624505617 47.62 %
Base Counts Overall C 4211946618 10.42 % 196552579 0.97 % 4015394039 19.87 %
Base Counts Overall G 4232361527 10.47 % 4028712004 19.93 % 203649523 1.01 %
Base Counts Overall T 15625806753 38.66 % 9530168009 47.15 % 6095638744 30.16 %
Base Counts Overall N 525059262 1.30 % 252900845 1.25 % 272158417 1.35 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9963204595688063
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 184715445



Mapping Quality

Mapping Quality Histogram
K006183_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006183_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0051.Bisulfite-Seq.DNA_Methylation.EGAX00001273061.fastq_MS005101