/EXTERNAL McGill EMC/mapping_coverage/K006183_1_lane_gembs
BACK
SAMPLE K006183_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
388697953 |
100% |
33088049050 |
100% |
| Mapped |
384625892 |
98.95 % |
32680842950 |
98.77 % |
| Passed |
317893829 |
81.78 % |
26007636650 |
78.60 % |
| NotPassed |
66732063 |
17.17 % |
6673206300 |
20.17 % |
| |
|
|
|
|
| LowMAPQ |
58024854 |
14.93 % |
5802485400 |
17.54 % |
| MateUnmapped |
4072061 |
1.05 % |
407206100 |
1.23 % |
| Duplicate |
3116964 |
0.80 % |
311696400 |
0.94 % |
| BadOrientation |
42 |
0.00 % |
4200 |
0.00 % |
| LargeInsertSize |
2444 |
0.00 % |
244400 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
5587759 |
1.44 % |
558775900 |
1.69 % |
| Unmapped |
4072061 |
1.05 % |
407206100 |
1.23 % |
Base Level Counts
| Bases |
# |
% |
| Total |
31782264100 |
100% |
| Passed |
24118287111 |
75.89 % |
| Trimmed |
1358558398 |
4.27 % |
| Clipped |
49219278 |
0.15 % |
| Overlapping |
5725408172 |
18.01 % |
| LowQuality |
530791141 |
1.67 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |