/EXTERNAL McGill EMC/methylation/K006183_1_lane_gembs

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SAMPLE K006183_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26164859 4935356 18.86 %
NonRefCpG 300520 36941 12.29 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006183_1_lane_gembs_coverage_refCpG.png ./IMG//K006183_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006183_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006183_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006183_1_lane_gembs_quality_refcpg.png ./IMG//K006183_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006183_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7356236 14.93 % 681354 4.79 % 108306 19.50 % 6281 5.08 %
Intermediate (0.3-0.7) 16261209 32.99 % 3286903 23.11 % 186179 33.52 % 28570 23.12 %
Methylated (0.7-1) 25670398 52.08 % 10255672 72.10 % 260863 46.97 % 88697 71.79 %
Median Methylation 0.710 0.830 0.670 0.830