/EXTERNAL McGill EMC/K006185_1_lane_gembs/McGill0127.Bisulfite-Seq.DNA_Methylation.EGAX00001425250.release_6

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SAMPLE K006185_1_lane_gembs LANE McGill0127.Bisulfite-Seq.DNA_Methylation.EGAX00001425250.release_6

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 671399178 100.00 % 335699589 100.00 % 335699589 100.00 %
General Reads 583313522 86.88 % 292386264 87.10 % 290927258 86.66 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 331605 0.05 % 166288 0.05 % 165317 0.05 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 87754051 13.07 % 43147037 12.85 % 44607014 13.29 %
Bisulfite_reads C2T 300899446 44.82 % 150861620 44.94 % 150037826 44.69 %
Bisulfite_reads G2A 282745681 42.11 % 141690932 42.21 % 141054749 42.02 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 182600520
Average Unique 54.39 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 25227726396 37.20 % 10221715145 30.15 % 15006011251 44.26 %
Base Counts Overall C 8544279533 12.60 % 1214616839 3.58 % 7329662694 21.62 %
Base Counts Overall G 8629393460 12.73 % 7427727167 21.91 % 1201666293 3.54 %
Base Counts Overall T 24681578828 36.40 % 14702050727 43.36 % 9979528101 29.43 %
Base Counts Overall N 728338761 1.07 % 339548611 1.00 % 388790150 1.15 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9945613719320542
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 245294270



Mapping Quality

Mapping Quality Histogram
McGill0127.Bisulfite-Seq.DNA_Methylation.EGAX00001425250.release_6.mapq.png



Read Length

Read Length Reads
100 335699589
100 335699589



Insert Size Plot

Insert Size Histogram
McGill0127.Bisulfite-Seq.DNA_Methylation.EGAX00001425250.release_6.isize.png