/EXTERNAL McGill EMC/mapping_coverage/K006185_1_lane_gembs
BACK
SAMPLE K006185_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
554002744 |
100% |
50007237817 |
100% |
| Mapped |
542846505 |
97.99 % |
48891613917 |
97.77 % |
| Passed |
312830566 |
56.47 % |
25890020017 |
51.77 % |
| NotPassed |
230015939 |
41.52 % |
23001593900 |
46.00 % |
| |
|
|
|
|
| LowMAPQ |
140044806 |
25.28 % |
14004480600 |
28.00 % |
| MateUnmapped |
11156239 |
2.01 % |
1115623900 |
2.23 % |
| Duplicate |
29618876 |
5.35 % |
2961887600 |
5.92 % |
| BadOrientation |
50 |
0.00 % |
5000 |
0.00 % |
| LargeInsertSize |
417516 |
0.08 % |
41751600 |
0.08 % |
| |
|
|
|
|
| NotCorrectlyAligned |
59934691 |
10.82 % |
5993469100 |
11.99 % |
| Unmapped |
11156239 |
2.01 % |
1115623900 |
2.23 % |
Base Level Counts
| Bases |
# |
% |
| Total |
31270791900 |
100% |
| Passed |
24265780514 |
77.60 % |
| Trimmed |
1337931653 |
4.28 % |
| Clipped |
148825663 |
0.48 % |
| Overlapping |
5231946220 |
16.73 % |
| LowQuality |
286307850 |
0.92 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |