/EXTERNAL McGill EMC/methylation/K006185_1_lane_gembs

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SAMPLE K006185_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 23838531 4720645 19.80 %
NonRefCpG 431008 31972 7.42 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006185_1_lane_gembs_coverage_refCpG.png ./IMG//K006185_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006185_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006185_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006185_1_lane_gembs_quality_refcpg.png ./IMG//K006185_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006185_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6497896 14.52 % 620003 4.54 % 264858 33.82 % 13540 10.69 %
Intermediate (0.3-0.7) 14929662 33.37 % 3258191 23.87 % 256762 32.79 % 32709 25.81 %
Methylated (0.7-1) 23315173 52.11 % 9770510 71.59 % 261495 33.39 % 80461 63.50 %
Median Methylation 0.710 0.830 0.500 0.790