/EXTERNAL McGill EMC/K006187_1_lane_gembs

BACK

SAMPLE K006187_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1154510962 100.00 % 577255481 100.00 % 577255481 100.00 %
General Reads 1028797549 89.11 % 509120764 88.20 % 519676785 90.03 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 592111 0.05 % 298367 0.05 % 293744 0.05 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 125121302 10.84 % 67836350 11.75 % 57284952 9.92 %
Bisulfite_reads C2T 524574211 45.44 % 259692360 44.99 % 264881851 45.89 %
Bisulfite_reads G2A 504815449 43.73 % 249726771 43.26 % 255088678 44.19 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 412971893
Average Unique 71.54 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 45162550280 38.73 % 19299034700 33.10 % 25863515580 44.36 %
Base Counts Overall C 13279609037 11.39 % 2101421481 3.60 % 11178187556 19.17 %
Base Counts Overall G 14069937744 12.07 % 11308058926 19.40 % 2761878818 4.74 %
Base Counts Overall T 42904066308 36.79 % 25000455354 42.88 % 17903610954 30.71 %
Base Counts Overall N 1189443793 1.02 % 593833120 1.02 % 595610673 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.951756776070963
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 472403608



Mapping Quality

Mapping Quality Histogram
K006187_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006187_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0001.Bisulfite-Seq.DNA_Methylation.EGAX00001272776.fastq_MS000101