/EXTERNAL McGill EMC/mapping_coverage/K006187_1_lane_gembs
BACK
SAMPLE K006187_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
783454122 |
100% |
74872094948 |
100% |
| Mapped |
755590985 |
96.44 % |
72085781248 |
96.28 % |
| Passed |
338890241 |
43.26 % |
30415706848 |
40.62 % |
| NotPassed |
416700744 |
53.19 % |
41670074400 |
55.66 % |
| |
|
|
|
|
| LowMAPQ |
158465384 |
20.23 % |
15846538400 |
21.16 % |
| MateUnmapped |
27863137 |
3.56 % |
2786313700 |
3.72 % |
| Duplicate |
247454688 |
31.59 % |
24745468800 |
33.05 % |
| BadOrientation |
124 |
0.00 % |
12400 |
0.00 % |
| LargeInsertSize |
232194 |
0.03 % |
23219400 |
0.03 % |
| |
|
|
|
|
| NotCorrectlyAligned |
10548354 |
1.35 % |
1054835400 |
1.41 % |
| Unmapped |
27863137 |
3.56 % |
2786313700 |
3.72 % |
Base Level Counts
| Bases |
# |
% |
| Total |
33822823400 |
100% |
| Passed |
28152621171 |
83.24 % |
| Trimmed |
1547875870 |
4.58 % |
| Clipped |
106653465 |
0.32 % |
| Overlapping |
3300463087 |
9.76 % |
| LowQuality |
715209807 |
2.11 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |