/EXTERNAL McGill EMC/methylation/K006187_1_lane_gembs

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SAMPLE K006187_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25256173 7560863 29.94 %
NonRefCpG 320752 63609 19.83 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006187_1_lane_gembs_coverage_refCpG.png ./IMG//K006187_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006187_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006187_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006187_1_lane_gembs_quality_refcpg.png ./IMG//K006187_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006187_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4544809 9.98 % 484687 2.75 % 105052 18.35 % 8613 4.97 %
Intermediate (0.3-0.7) 12293949 26.98 % 3169532 17.98 % 164210 28.68 % 33225 19.18 %
Methylated (0.7-1) 28723093 63.04 % 13971614 79.27 % 303246 52.97 % 131410 75.85 %
Median Methylation 0.790 0.870 0.720 0.850