/EXTERNAL McGill EMC/K006188_1_lane_gembs

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SAMPLE K006188_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 378148916 100.00 % 189074458 100.00 % 189074458 100.00 %
General Reads 368397527 97.42 % 184608435 97.64 % 183789092 97.20 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 223891 0.06 % 112222 0.06 % 111669 0.06 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 9527498 2.52 % 4353801 2.30 % 5173697 2.74 %
Bisulfite_reads C2T 187601554 49.61 % 93999626 49.72 % 93601928 49.51 %
Bisulfite_reads G2A 181019864 47.87 % 90721031 47.98 % 90298833 47.76 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 153950392
Average Unique 81.42 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14848482518 38.88 % 5790715076 30.32 % 9057767442 47.43 %
Base Counts Overall C 4071831282 10.66 % 224277489 1.17 % 3847553793 20.15 %
Base Counts Overall G 4060988923 10.63 % 3841584160 20.12 % 219404763 1.15 %
Base Counts Overall T 14779922543 38.70 % 9033712429 47.31 % 5746210114 30.09 %
Base Counts Overall N 431815250 1.13 % 206231104 1.08 % 225584146 1.18 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9930601129182276
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 173063383



Mapping Quality

Mapping Quality Histogram
K006188_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006188_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0047.Bisulfite-Seq.DNA_Methylation.EGAX00001273055.fastq_MS004701