/EXTERNAL McGill EMC/mapping_coverage/K006188_1_lane_gembs
BACK
SAMPLE K006188_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
366331909 |
100% |
32984396227 |
100% |
| Mapped |
363578070 |
99.25 % |
32709012327 |
99.17 % |
| Passed |
305660165 |
83.44 % |
26917221827 |
81.61 % |
| NotPassed |
57917905 |
15.81 % |
5791790500 |
17.56 % |
| |
|
|
|
|
| LowMAPQ |
42860716 |
11.70 % |
4286071600 |
12.99 % |
| MateUnmapped |
2753839 |
0.75 % |
275383900 |
0.83 % |
| Duplicate |
2075039 |
0.57 % |
207503900 |
0.63 % |
| BadOrientation |
16 |
0.00 % |
1600 |
0.00 % |
| LargeInsertSize |
1584 |
0.00 % |
158400 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
12980550 |
3.54 % |
1298055000 |
3.94 % |
| Unmapped |
2753839 |
0.75 % |
275383900 |
0.83 % |
Base Level Counts
| Bases |
# |
% |
| Total |
30553032100 |
100% |
| Passed |
25144203766 |
82.30 % |
| Trimmed |
1363928346 |
4.46 % |
| Clipped |
35475020 |
0.12 % |
| Overlapping |
3600335253 |
11.78 % |
| LowQuality |
409089715 |
1.34 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |