/EXTERNAL McGill EMC/methylation/K006188_1_lane_gembs

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SAMPLE K006188_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26209235 5644526 21.54 %
NonRefCpG 299036 42164 14.10 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006188_1_lane_gembs_coverage_refCpG.png ./IMG//K006188_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006188_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006188_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006188_1_lane_gembs_quality_refcpg.png ./IMG//K006188_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006188_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7742909 15.55 % 1065987 6.56 % 107068 19.28 % 7619 5.48 %
Intermediate (0.3-0.7) 16545452 33.24 % 3922716 24.12 % 188433 33.92 % 33468 24.08 %
Methylated (0.7-1) 25491256 51.21 % 11271544 69.32 % 259941 46.80 % 97900 70.44 %
Median Methylation 0.700 0.820 0.670 0.820