/EXTERNAL McGill EMC/K006192_1_lane_gembs/McGill0008.Bisulfite-Seq.DNA_Methylation.EGAX00001425091.release_6

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SAMPLE K006192_1_lane_gembs LANE McGill0008.Bisulfite-Seq.DNA_Methylation.EGAX00001425091.release_6

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 367586266 100.00 % 183793133 100.00 % 183793133 100.00 %
General Reads 359464008 97.79 % 180200134 98.05 % 179263874 97.54 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 423578 0.12 % 212426 0.12 % 211152 0.11 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 7698680 2.09 % 3380573 1.84 % 4318107 2.35 %
Bisulfite_reads C2T 183968409 50.05 % 92221687 50.18 % 91746722 49.92 %
Bisulfite_reads G2A 175919177 47.86 % 88190873 47.98 % 87728304 47.73 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 151018103
Average Unique 82.17 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14420215363 38.84 % 5967048035 32.14 % 8453167328 45.54 %
Base Counts Overall C 4014614698 10.81 % 290610743 1.57 % 3724003955 20.06 %
Base Counts Overall G 4083156358 11.00 % 3792418945 20.43 % 290737413 1.57 %
Base Counts Overall T 14236560679 38.35 % 8327366415 44.86 % 5909194264 31.83 %
Base Counts Overall N 371665768 1.00 % 185662295 1.00 % 186003473 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9682723943859765
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 174620299



Mapping Quality

Mapping Quality Histogram
McGill0008.Bisulfite-Seq.DNA_Methylation.EGAX00001425091.release_6.mapq.png



Read Length

Read Length Reads
100 183793133
100 183793133



Insert Size Plot

Insert Size Histogram
McGill0008.Bisulfite-Seq.DNA_Methylation.EGAX00001425091.release_6.isize.png