/EXTERNAL McGill EMC/mapping_coverage/K006192_1_lane_gembs
BACK
SAMPLE K006192_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
354991700 |
100% |
33306345455 |
100% |
| Mapped |
351975594 |
99.15 % |
33004734855 |
99.09 % |
| Passed |
294788024 |
83.04 % |
27285977855 |
81.92 % |
| NotPassed |
57187570 |
16.11 % |
5718757000 |
17.17 % |
| |
|
|
|
|
| LowMAPQ |
48124526 |
13.56 % |
4812452600 |
14.45 % |
| MateUnmapped |
3016106 |
0.85 % |
301610600 |
0.91 % |
| Duplicate |
4479628 |
1.26 % |
447962800 |
1.34 % |
| BadOrientation |
22 |
0.00 % |
2200 |
0.00 % |
| LargeInsertSize |
2322 |
0.00 % |
232200 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
4581072 |
1.29 % |
458107200 |
1.38 % |
| Unmapped |
3016106 |
0.85 % |
301610600 |
0.91 % |
Base Level Counts
| Bases |
# |
% |
| Total |
29447016500 |
100% |
| Passed |
25349467698 |
86.09 % |
| Trimmed |
1364040385 |
4.63 % |
| Clipped |
38195772 |
0.13 % |
| Overlapping |
2122842873 |
7.21 % |
| LowQuality |
572469772 |
1.94 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |