/EXTERNAL McGill EMC/K006193_1_lane_gembs

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SAMPLE K006193_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 699634600 100.00 % 349817300 100.00 % 349817300 100.00 %
General Reads 684765824 97.87 % 343426101 98.17 % 341339723 97.58 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1401013 0.20 % 703556 0.20 % 697457 0.20 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 13467763 1.92 % 5687643 1.63 % 7780120 2.22 %
Bisulfite_reads C2T 349088912 49.90 % 175067670 50.05 % 174021242 49.75 %
Bisulfite_reads G2A 337077925 48.18 % 169061987 48.33 % 168015938 48.03 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 283399816
Average Unique 81.01 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 27606280064 39.07 % 11913395021 33.72 % 15692885043 44.42 %
Base Counts Overall C 7367643691 10.43 % 386144256 1.09 % 6981499435 19.76 %
Base Counts Overall G 7502213620 10.62 % 7087221376 20.06 % 414992244 1.17 %
Base Counts Overall T 27466812961 38.87 % 15592696199 44.13 % 11874116762 33.61 %
Base Counts Overall N 720144264 1.02 % 352090448 1.00 % 368053816 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9713363768373722
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 325623253



Mapping Quality

Mapping Quality Histogram
K006193_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006193_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0019.Bisulfite-Seq.DNA_Methylation.EGAX00001272931.fastq_MS001901