/EXTERNAL McGill EMC/mapping_coverage/K006193_1_lane_gembs
BACK
SAMPLE K006193_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
622097082 |
100% |
57986455281 |
100% |
| Mapped |
615402526 |
98.92 % |
57316999681 |
98.85 % |
| Passed |
443697856 |
71.32 % |
40146532681 |
69.23 % |
| NotPassed |
171704670 |
27.60 % |
17170467000 |
29.61 % |
| |
|
|
|
|
| LowMAPQ |
101154972 |
16.26 % |
10115497200 |
17.44 % |
| MateUnmapped |
6694556 |
1.08 % |
669455600 |
1.15 % |
| Duplicate |
62969882 |
10.12 % |
6296988200 |
10.86 % |
| BadOrientation |
86 |
0.00 % |
8600 |
0.00 % |
| LargeInsertSize |
105040 |
0.02 % |
10504000 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
7474690 |
1.20 % |
747469000 |
1.29 % |
| Unmapped |
6694556 |
1.08 % |
669455600 |
1.15 % |
Base Level Counts
| Bases |
# |
% |
| Total |
44338090400 |
100% |
| Passed |
37228621408 |
83.97 % |
| Trimmed |
2018023137 |
4.55 % |
| Clipped |
77391949 |
0.17 % |
| Overlapping |
4114165770 |
9.28 % |
| LowQuality |
899888136 |
2.03 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |