/EXTERNAL McGill EMC/methylation/K006193_1_lane_gembs

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SAMPLE K006193_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26077881 9276666 35.57 %
NonRefCpG 294268 80701 27.42 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006193_1_lane_gembs_coverage_refCpG.png ./IMG//K006193_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006193_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006193_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006193_1_lane_gembs_quality_refcpg.png ./IMG//K006193_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006193_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6128925 12.77 % 1106249 4.95 % 93746 17.50 % 14831 6.77 %
Intermediate (0.3-0.7) 14256994 29.71 % 4889578 21.87 % 162620 30.35 % 49880 22.76 %
Methylated (0.7-1) 27593752 57.51 % 16364487 73.19 % 279437 52.15 % 154437 70.47 %
Median Methylation 0.750 0.840 0.710 0.830