/EXTERNAL Roadmap/mapping_coverage/K006479_K006480_2_lane_gembs
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SAMPLE K006479_K006480_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
4530011256 |
100% |
273557603419 |
100% |
| Mapped |
4530011256 |
100.00 % |
273557603419 |
100.00 % |
| Passed |
3578518101 |
79.00 % |
242708169319 |
88.72 % |
| NotPassed |
951493155 |
21.00 % |
30849434100 |
11.28 % |
| |
|
|
|
|
| LowMAPQ |
308494341 |
6.81 % |
30849434100 |
11.28 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
642998814 |
14.19 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
179779403600 |
100% |
| Passed |
167364037137 |
93.09 % |
| Trimmed |
8963051587 |
4.99 % |
| Clipped |
127214622 |
0.07 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
3325100254 |
1.85 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |