/EXTERNAL Roadmap/methylation/K006479_K006480_2_lane_gembs
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SAMPLE K006479_K006480_2_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26885963 |
23557695 |
87.62 % |
| NonRefCpG |
244593 |
191102 |
78.13 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
7156452 |
13.48 % |
6163994 |
12.87 % |
39195 |
8.49 % |
26494 |
6.82 % |
| Intermediate (0.3-0.7) |
9206662 |
17.34 % |
8238696 |
17.20 % |
88587 |
19.19 % |
69219 |
17.81 % |
| Methylated (0.7-1) |
36742185 |
69.19 % |
33506794 |
69.94 % |
333805 |
72.32 % |
292897 |
75.37 % |
| |
|
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|
|
|
|
|
|
| Median Methylation |
0.840 |
|
0.840 |
|
0.850 |
|
0.860 |
|