/EXTERNAL Roadmap/mapping_coverage/K006513_K006514_K006515_3_lane_gembs
BACK
SAMPLE K006513_K006514_K006515_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
4499791631 |
100% |
274368629668 |
100% |
| Mapped |
4499791631 |
100.00 % |
274368629668 |
100.00 % |
| Passed |
3507682175 |
77.95 % |
241556733185 |
88.04 % |
| NotPassed |
992109456 |
22.05 % |
32811896483 |
11.96 % |
| |
|
|
|
|
| LowMAPQ |
327921018 |
7.29 % |
32811896483 |
11.96 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
664188438 |
14.76 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
176333398386 |
100% |
| Passed |
163999333345 |
93.01 % |
| Trimmed |
8789510885 |
4.98 % |
| Clipped |
100602783 |
0.06 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
3443951373 |
1.95 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |