/EXTERNAL Roadmap/methylation/K006513_K006514_K006515_3_lane_gembs
BACK
SAMPLE K006513_K006514_K006515_3_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26958255 |
23532319 |
87.29 % |
| NonRefCpG |
239321 |
192794 |
80.56 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5904539 |
11.09 % |
4893974 |
10.21 % |
26990 |
5.89 % |
16391 |
4.18 % |
| Intermediate (0.3-0.7) |
9709290 |
18.24 % |
8702861 |
18.16 % |
92072 |
20.11 % |
75262 |
19.19 % |
| Methylated (0.7-1) |
37627445 |
70.67 % |
34317976 |
71.62 % |
338836 |
74.00 % |
300579 |
76.63 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.840 |
|
0.840 |
|
0.850 |
|
0.860 |
|