{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 30235503, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 26137468, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 86.45, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 78928917, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 58442349, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 74.04, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 18561786, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 1956637, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.105412
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 45368524, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 1114574, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.024567
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 18561154, 
            "distinct_read_pairs": 17059502, 
            "one_read_pair": 15767293, 
            "two_read_pair": 1192881, 
            "NRF": 0.919097, 
            "PBC1": 0.924253, 
            "PBC2": 13.217826
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 45222521, 
            "distinct_read_pairs": 44726973, 
            "one_read_pair": 44351639, 
            "two_read_pair": 353622, 
            "NRF": 0.989042, 
            "PBC1": 0.991608, 
            "PBC2": 125.42104
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 16605149, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 16605149, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 44253950, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 44253950, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 60849, 
        "Np": 0, 
        "N_opt": 60849, 
        "N_consv": 60849, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 320, 
            "corr_est_frag_len": 0.183008238804446, 
            "phantom_peak": 75, 
            "corr_phantom_peak": 0.2145556, 
            "argmin_corr": 1500, 
            "min_corr": 0.1741661, 
            "NSC": 1.050769, 
            "RSC": 0.2189227
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.230217807376
        }, 
        "rep1-pr1": {
            "FRiP": 0.173844324879
        }, 
        "rep1-pr2": {
            "FRiP": 0.171996521442
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.114938107438
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.214961497066, 
            "auc": 0.489851632828, 
            "ch_div": 0.220078532357, 
            "elbow_pt": 2.08759629724e-82, 
            "jsd": 0.64446914686, 
            "syn_auc": 0.509212479107, 
            "syn_elbow_pt": 0.16173581153, 
            "syn_jsd": 0.316379634357
        }
    ]
}
