/EXTERNAL Roadmap/mapping_coverage/K006481_K006482_K006483_K006484_K006485_5_lane_gembs
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SAMPLE K006481_K006482_K006483_K006484_K006485_5_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
6994607330 |
100% |
452252572953 |
100% |
| Mapped |
6994607330 |
100.00 % |
452252572953 |
100.00 % |
| Passed |
4943307215 |
70.67 % |
387770931064 |
85.74 % |
| NotPassed |
2051300115 |
29.33 % |
64481641889 |
14.26 % |
| |
|
|
|
|
| LowMAPQ |
643087232 |
9.19 % |
64481641889 |
14.26 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
1408212883 |
20.13 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
248863245520 |
100% |
| Passed |
228715534409 |
91.90 % |
| Trimmed |
12366461739 |
4.97 % |
| Clipped |
286926466 |
0.12 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
7494322906 |
3.01 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |