/EXTERNAL Roadmap/methylation/K006481_K006482_K006483_K006484_K006485_5_lane_gembs
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SAMPLE K006481_K006482_K006483_K006484_K006485_5_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
27031572 |
24342519 |
90.05 % |
| NonRefCpG |
239618 |
196972 |
82.20 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
6750390 |
12.63 % |
6397955 |
13.07 % |
31915 |
6.94 % |
23028 |
5.78 % |
| Intermediate (0.3-0.7) |
7026792 |
13.15 % |
6362390 |
13.00 % |
70637 |
15.37 % |
56649 |
14.23 % |
| Methylated (0.7-1) |
39674269 |
74.22 % |
36194109 |
73.93 % |
357050 |
77.69 % |
318451 |
79.99 % |
| |
|
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|
|
|
|
|
|
| Median Methylation |
0.870 |
|
0.870 |
|
0.880 |
|
0.880 |
|