{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 41652323, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 40365598, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 96.91, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 28090405, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 23368641, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 83.19, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 36506971, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 819646, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.022452
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 19599385, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 337805, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.017235
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 36506687, 
            "distinct_read_pairs": 36022747, 
            "one_read_pair": 35553473, 
            "two_read_pair": 458941, 
            "NRF": 0.986744, 
            "PBC1": 0.986973, 
            "PBC2": 77.468505
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 19598014, 
            "distinct_read_pairs": 19409739, 
            "one_read_pair": 19243513, 
            "two_read_pair": 160568, 
            "NRF": 0.990393, 
            "PBC1": 0.991436, 
            "PBC2": 119.846501
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 35687325, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 35687325, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 19261580, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 19261580, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 152128, 
        "Np": 0, 
        "N_opt": 152128, 
        "N_consv": 152128, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 130, 
            "corr_est_frag_len": 0.186904530931058, 
            "phantom_peak": 75, 
            "corr_phantom_peak": 0.1904143, 
            "argmin_corr": 1500, 
            "min_corr": 0.1751925, 
            "NSC": 1.066852, 
            "RSC": 0.7694248
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.267242586162
        }, 
        "rep1-pr1": {
            "FRiP": 0.308985713809
        }, 
        "rep1-pr2": {
            "FRiP": 0.308833557766
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.248764341618
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.203770567409, 
            "auc": 0.492959668294, 
            "ch_div": 0.140187214849, 
            "elbow_pt": 1.40233229767e-172, 
            "jsd": 0.730297856346, 
            "syn_auc": 0.49924381639, 
            "syn_elbow_pt": 0.217974835133, 
            "syn_jsd": 0.39004715537
        }
    ]
}
