{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 40890870, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 35700554, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 87.31, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 41779196, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 37687227, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 90.21, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 30009632, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 2382759, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.0794
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 28033122, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 346879, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.012374
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 30000505, 
            "distinct_read_pairs": 27872489, 
            "one_read_pair": 26033278, 
            "two_read_pair": 1599960, 
            "NRF": 0.929067, 
            "PBC1": 0.934013, 
            "PBC2": 16.271206
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 27941537, 
            "distinct_read_pairs": 27690266, 
            "one_read_pair": 27445447, 
            "two_read_pair": 242017, 
            "NRF": 0.991007, 
            "PBC1": 0.991159, 
            "PBC2": 113.402972
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 27626873, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 27626873, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 27686243, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 27686243, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 75982, 
        "Np": 0, 
        "N_opt": 75982, 
        "N_consv": 75982, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 165, 
            "corr_est_frag_len": 0.318304906555593, 
            "phantom_peak": 40, 
            "corr_phantom_peak": 0.284284, 
            "argmin_corr": 1500, 
            "min_corr": 0.2022058, 
            "NSC": 1.574163, 
            "RSC": 1.414493
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.555617428889
        }, 
        "rep1-pr1": {
            "FRiP": 0.533945940881
        }, 
        "rep1-pr2": {
            "FRiP": 0.53404753045
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.529253523757
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.106725306096, 
            "auc": 0.488847499687, 
            "ch_div": 0.286632251976, 
            "elbow_pt": 4.67972120957e-68, 
            "jsd": 0.859009064845, 
            "syn_auc": 0.517394845704, 
            "syn_elbow_pt": 0.448931802372, 
            "syn_jsd": 0.553071318846
        }
    ]
}