/EXTERNAL Roadmap/mapping_coverage/K006489_1_lane_gembs
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SAMPLE K006489_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1318395766 |
100% |
112791512506 |
100% |
| Mapped |
1216533775 |
92.27 % |
102605313406 |
90.97 % |
| Passed |
682566204 |
51.77 % |
49208556306 |
43.63 % |
| NotPassed |
533967571 |
40.50 % |
53396757100 |
47.34 % |
| |
|
|
|
|
| LowMAPQ |
479267716 |
36.35 % |
47926771600 |
42.49 % |
| MateUnmapped |
101861991 |
7.73 % |
10186199100 |
9.03 % |
| Duplicate |
4667252 |
0.35 % |
466725200 |
0.41 % |
| BadOrientation |
538 |
0.00 % |
53800 |
0.00 % |
| LargeInsertSize |
114208 |
0.01 % |
11420800 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
49917857 |
3.79 % |
4991785700 |
4.43 % |
| Unmapped |
101861991 |
7.73 % |
10186199100 |
9.03 % |
Base Level Counts
| Bases |
# |
% |
| Total |
68248150700 |
100% |
| Passed |
42328804215 |
62.02 % |
| Trimmed |
2686994663 |
3.94 % |
| Clipped |
884278219 |
1.30 % |
| Overlapping |
18155316175 |
26.60 % |
| LowQuality |
4192757428 |
6.14 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |