/EXTERNAL Roadmap/methylation/K006489_1_lane_gembs

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SAMPLE K006489_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25744182 9298468 36.12 %
NonRefCpG 394272 85231 21.62 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006489_1_lane_gembs_coverage_refCpG.png ./IMG//K006489_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006489_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006489_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006489_1_lane_gembs_quality_refcpg.png ./IMG//K006489_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006489_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5138191 11.32 % 924422 4.37 % 186642 26.96 % 29551 11.59 %
Intermediate (0.3-0.7) 12470102 27.48 % 4182271 19.79 % 193552 27.96 % 59669 23.40 %
Methylated (0.7-1) 27771436 61.20 % 16029003 75.84 % 312075 45.08 % 165801 65.01 %
Median Methylation 0.780 0.850 0.640 0.810