{
    "name": "Histone ChIP-Seq SE ENCSR925WMT with input ENCSR268LIX", 
    "desc": "Histone ChIP-Seq SE ENCSR925WMT with input ENCSR268LIX", 
    "flagstat_qc": [
        {
            "total": 40897250, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 36670511, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 89.66, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 35292037, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 32392452, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 91.78, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 26856517, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 762784, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.028402
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 24659504, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 374849, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.015201
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 26850306, 
            "distinct_read_pairs": 26175955, 
            "one_read_pair": 25525127, 
            "two_read_pair": 633385, 
            "NRF": 0.974885, 
            "PBC1": 0.975136, 
            "PBC2": 40.299545
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 24588383, 
            "distinct_read_pairs": 24302199, 
            "one_read_pair": 24034745, 
            "two_read_pair": 262605, 
            "NRF": 0.988361, 
            "PBC1": 0.988995, 
            "PBC2": 91.524324
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 26093733, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 26093733, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 24284655, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 24284655, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 138803, 
        "Np": 0, 
        "N_opt": 138803, 
        "N_consv": 138803, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 90, 
            "corr_est_frag_len": 0.184054866564917, 
            "phantom_peak": 35, 
            "corr_phantom_peak": 0.1965514, 
            "argmin_corr": 1500, 
            "min_corr": 0.1780815, 
            "NSC": 1.033543, 
            "RSC": 0.3234126
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.168067359597
        }, 
        "rep1-pr1": {
            "FRiP": 0.211794921015
        }, 
        "rep1-pr2": {
            "FRiP": 0.212045218152
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.132010274678
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.217924063007, 
            "auc": 0.488517292938, 
            "ch_div": 0.178467893173, 
            "elbow_pt": 3.82626524062e-64, 
            "jsd": 0.685003618741, 
            "syn_auc": 0.52007592586, 
            "syn_elbow_pt": 0.158780291167, 
            "syn_jsd": 0.333052728402
        }
    ]
}
