/EXTERNAL Roadmap/mapping_coverage/K006490_K006491_K006492_3_lane_gembs
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SAMPLE K006490_K006491_K006492_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
4542749182 |
100% |
280582977587 |
100% |
| Mapped |
4542749182 |
100.00 % |
280582977587 |
100.00 % |
| Passed |
3456747485 |
76.09 % |
246188935887 |
87.74 % |
| NotPassed |
1086001697 |
23.91 % |
34394041700 |
12.26 % |
| |
|
|
|
|
| LowMAPQ |
343940417 |
7.57 % |
34394041700 |
12.26 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
742061280 |
16.34 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
173688685000 |
100% |
| Passed |
160356965117 |
92.32 % |
| Trimmed |
8635474913 |
4.97 % |
| Clipped |
306090404 |
0.18 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
4390154566 |
2.53 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |