/EXTERNAL Roadmap/methylation/K006490_K006491_K006492_3_lane_gembs
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SAMPLE K006490_K006491_K006492_3_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26955501 |
23484730 |
87.12 % |
| NonRefCpG |
239942 |
192545 |
80.25 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
6148179 |
11.55 % |
5088698 |
10.64 % |
30195 |
6.58 % |
18789 |
4.79 % |
| Intermediate (0.3-0.7) |
8845714 |
16.62 % |
7868710 |
16.45 % |
83941 |
18.30 % |
67306 |
17.17 % |
| Methylated (0.7-1) |
38242421 |
71.84 % |
34888147 |
72.92 % |
344555 |
75.12 % |
305943 |
78.04 % |
| |
|
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|
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|
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| Median Methylation |
0.850 |
|
0.860 |
|
0.860 |
|
0.870 |
|