{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 66576785, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 65513772, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.4, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 72402630, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 71162822, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.29, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 53759351, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 3177823, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.059112
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 53068467, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 827632, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.015596
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 53746506, 
            "distinct_read_pairs": 50737115, 
            "one_read_pair": 47899594, 
            "two_read_pair": 2680512, 
            "NRF": 0.944008, 
            "PBC1": 0.944074, 
            "PBC2": 17.869569
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 52965267, 
            "distinct_read_pairs": 52334926, 
            "one_read_pair": 51732828, 
            "two_read_pair": 592619, 
            "NRF": 0.988099, 
            "PBC1": 0.988495, 
            "PBC2": 87.295257
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 50581528, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 50581528, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 52240835, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 52240835, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 150598, 
        "Np": 0, 
        "N_opt": 150598, 
        "N_consv": 150598, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 190, 
            "corr_est_frag_len": 0.180274218961481, 
            "phantom_peak": 35, 
            "corr_phantom_peak": 0.1848164, 
            "argmin_corr": 1500, 
            "min_corr": 0.1728202, 
            "NSC": 1.043132, 
            "RSC": 0.6213645
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.317529996391
        }, 
        "rep1-pr1": {
            "FRiP": 0.274282486874
        }, 
        "rep1-pr2": {
            "FRiP": 0.274584223433
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.255972456
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.210874566104, 
            "auc": 0.491765813629, 
            "ch_div": 0.145070354954, 
            "elbow_pt": 8.49243156107e-126, 
            "jsd": 0.700356673024, 
            "syn_auc": 0.499867835225, 
            "syn_elbow_pt": 0.220464442848, 
            "syn_jsd": 0.368410357929
        }
    ]
}
