/EXTERNAL Roadmap/mapping_coverage/K006493_K006494_K006495_K006496_4_lane_gembs
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SAMPLE K006493_K006494_K006495_K006496_4_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
8593456652 |
100% |
570401538153 |
100% |
| Mapped |
8593456652 |
100.00 % |
570401538153 |
100.00 % |
| Passed |
5773839897 |
67.19 % |
500112846596 |
87.68 % |
| NotPassed |
2819616755 |
32.81 % |
70288691557 |
12.32 % |
| |
|
|
|
|
| LowMAPQ |
701035188 |
8.16 % |
70288691557 |
12.32 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
2118581567 |
24.65 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
290555210644 |
100% |
| Passed |
269440423502 |
92.73 % |
| Trimmed |
14458050293 |
4.98 % |
| Clipped |
195023638 |
0.07 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
6461713211 |
2.22 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |