/EXTERNAL Roadmap/methylation/K006493_K006494_K006495_K006496_4_lane_gembs
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SAMPLE K006493_K006494_K006495_K006496_4_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26818809 |
24187753 |
90.19 % |
| NonRefCpG |
136252 |
107043 |
78.56 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5732832 |
10.81 % |
5441359 |
11.20 % |
15231 |
5.89 % |
8796 |
4.04 % |
| Intermediate (0.3-0.7) |
7797397 |
14.70 % |
7123922 |
14.66 % |
44465 |
17.19 % |
34381 |
15.79 % |
| Methylated (0.7-1) |
39507768 |
74.49 % |
36039413 |
74.15 % |
198950 |
76.92 % |
174545 |
80.17 % |
| |
|
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|
|
|
|
|
|
| Median Methylation |
0.870 |
|
0.870 |
|
0.870 |
|
0.880 |
|