{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 79763820, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 76689679, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 96.15, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 83195519, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 81824524, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.35, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 56984460, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 16792827, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.294691
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 62303006, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 2667816, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.04282
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 56977215, 
            "distinct_read_pairs": 41266558, 
            "one_read_pair": 31589818, 
            "two_read_pair": 6256847, 
            "NRF": 0.724264, 
            "PBC1": 0.765506, 
            "PBC2": 5.04884
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 61953107, 
            "distinct_read_pairs": 59705432, 
            "one_read_pair": 57583605, 
            "two_read_pair": 2034913, 
            "NRF": 0.96372, 
            "PBC1": 0.964462, 
            "PBC2": 28.297822
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 40191633, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 40191633, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 59635190, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 59635190, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 37602, 
        "Np": 0, 
        "N_opt": 37602, 
        "N_consv": 37602, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 185, 
            "corr_est_frag_len": 0.43427955995214, 
            "phantom_peak": 35, 
            "corr_phantom_peak": 0.3853136, 
            "argmin_corr": 1500, 
            "min_corr": 0.2054526, 
            "NSC": 2.11377, 
            "RSC": 1.272244
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.626603256663
        }, 
        "rep1-pr1": {
            "FRiP": 0.616186640761
        }, 
        "rep1-pr2": {
            "FRiP": 0.616309647382
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.61376289515
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.087182644762, 
            "auc": 0.490755761656, 
            "ch_div": 0.254724337033, 
            "elbow_pt": 1.48562107284e-99, 
            "jsd": 0.897248168645, 
            "syn_auc": 0.517009770811, 
            "syn_elbow_pt": 0.554247627265, 
            "syn_jsd": 0.629673416445
        }
    ]
}
