/EXTERNAL Roadmap/mapping_coverage/K006499_1_lane_gembs
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SAMPLE K006499_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
4521303167 |
100% |
276516222990 |
100% |
| Mapped |
4521303167 |
100.00 % |
276516222990 |
100.00 % |
| Passed |
3511847558 |
77.67 % |
238970224780 |
86.42 % |
| NotPassed |
1009455609 |
22.33 % |
37545998210 |
13.58 % |
| |
|
|
|
|
| LowMAPQ |
374778304 |
8.29 % |
37545998210 |
13.58 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
634677305 |
14.04 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
176863243671 |
100% |
| Passed |
163272901119 |
92.32 % |
| Trimmed |
8787646327 |
4.97 % |
| Clipped |
263152266 |
0.15 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
4539543959 |
2.57 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |