/EXTERNAL Roadmap/methylation/K006499_1_lane_gembs

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SAMPLE K006499_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26894715 23838301 88.64 %
NonRefCpG 248288 191745 77.23 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006499_1_lane_gembs_coverage_refCpG.png ./IMG//K006499_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006499_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006499_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006499_1_lane_gembs_quality_refcpg.png ./IMG//K006499_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006499_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5444624 10.25 % 4852924 10.06 % 26300 5.64 % 13756 3.53 %
Intermediate (0.3-0.7) 8378084 15.77 % 7524502 15.59 % 83116 17.83 % 62776 16.11 %
Methylated (0.7-1) 39311277 73.99 % 35875020 74.35 % 356631 76.52 % 313254 80.37 %
Median Methylation 0.860 0.860 0.860 0.870