/EXTERNAL Roadmap/mapping_coverage/K006500_K006501_2_lane_gembs
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SAMPLE K006500_K006501_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
4465522417 |
100% |
267029493336 |
100% |
| Mapped |
4465522417 |
100.00 % |
267029493336 |
100.00 % |
| Passed |
3588182366 |
80.35 % |
236642386209 |
88.62 % |
| NotPassed |
877340051 |
19.65 % |
30387107127 |
11.38 % |
| |
|
|
|
|
| LowMAPQ |
303674814 |
6.80 % |
30387107127 |
11.38 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
573665237 |
12.85 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
180424617962 |
100% |
| Passed |
167798264549 |
93.00 % |
| Trimmed |
8985204799 |
4.98 % |
| Clipped |
152904497 |
0.08 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
3488244117 |
1.93 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |